Publications

* Publications listed at NCBI (PubMed)
* Preprints at bioRxiv (early access to unpublished work)

Selected publications

Bright A.R., S. van Genesen, Q. Li, A. Grasso, S. Fröhlich, M. van der Sande, S.J. van Heeringen, G.J.C. Veenstra. 2021. Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. EMBO J, e104913 (doi: 10.15252/embj.2020104913).
www The EMBO Journal          download PDF          data NCBI GSE145619
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Perino M., G. van Mierlo, C. Loh, S.M.T. Wardle, H. Marks, G.J.C. Veenstra. 2020. Two functional axes of feedback-enforced PRC2 recruitment in mouse embryonic stem cells. Stem Cell Reports, 15: 1287-1300 (doi: 10.1016/j.stemcr.2020.07.007).
www Stem Cell Reports          download PDF          data NCBI GSE133085          tracks UCSC track hub
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Peñalosa-Ruiz G., V. Bousgouni, J.P. Gerlach, S. Waarlo, JV van de Ven, T.E. Veenstra, J.C.R. Silva, S.J. van Heeringen, C. Bakal, K.W. Mulder, G.J.C. Veenstra. 2019. WDR5, BRCA1, and BARD1 Co-regulate the DNA Damage Response and Modulate the Mesenchymal-to-Epithelial Transition during Early Reprogramming. Stem Cell Reports, 12, 743-756 (doi: 10.1016/j.stemcr.2019.02.006).
www Stem Cell Reports          download PDF          data NCBI Accession GSE118680
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Perino M., G. van Mierlo, I.D. Karemaker, S. van Genesen, M. Vermeulen, H. Marks, S.J. van Heeringen, G.J.C. Veenstra. 2018. MTF2 recruits Polycomb Repressive Complex 2 by helical shape-selective DNA binding. Nature Genetics, 50: 1002-1010 (doi: 10.1038/s41588-018-0134-8).
www Nature Genetics          download Springer Nature SharedIt Online          data NCBI GSE GSE94300          tracks UCSC track hub
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Gibeaux R, Acker R, Kitaoka M, Georgiou G, van Kruijsbergen I, Ford B, Marcotte EM, Nomura DK, Kwon T, Veenstra GJC, Heald R. 2018. Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus. Nature, 553, 337-341 (doi: 10.1038/nature25188).
www Nature          download PDF
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Elurbe DM, Paranjpe SS, Georgiou G, van Kruijsbergen I, Bogdanovic O, Gibeaux R, Heald R, Lister R, Huynen MA, van Heeringen SJ, Veenstra GJC. 2017. Regulatory remodeling in the allo-tetraploid frog Xenopus laevis. Genome Biol., 18, page 198 (doi: 10.1186/s13059-017-1335-7.).
www Genome Biology          download PDF          tracks UCSC Xenopus track hub
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Session A.M., Y. Uno, T. Kwon, J.A. Chapman, A. Toyoda, S. Takahashi, A. Fukui, A. Hikosaka, A. Suzuki, M. Kondo, S.J. van Heeringen, (...), O. Bogdanovic, R. Lister, G. Georgiou, S.S. Paranjpe, I. van Kruijsbergen, (...), G.J.C. Veenstra, A. Fujiyama, R.M. Harland, M. Taira, D.S. Rokhsar. 2016. Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538: 336-343 (doi: 10.1038/nature19840).
www Nature          download PDF          tracks UCSC Xenopus track hub
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Gazdag E., U.G. Jacobi, I. van Kruijsbergen, D.L. Weeks, G.J.C. Veenstra. 2016. Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors. Development, 143, 1340-1350 (doi:10.1242/dev.131664).
www Development          download PDF         
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Hontelez S., I. van Kruijsbergen, G. Georgiou, S. J. van Heeringen, O. Bogdanovic, R. Lister, G.J.C. Veenstra. 2015. Embryonic transcription is controlled by maternally defined chromatin state. Nature Commun., 6, 10148 (doi: 10.1038/ncomms10148).
www Nature Communications          download PDF          data NCBI GSE67974          tracks UCSC Xenopus track hub
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Reviews

Peñalosa-Ruiz G., A.R. Bright, K.W.Mulder, G.J.C. Veenstra. 2019. The interplay of chromatin and transcription factors during cell fate transitions in development and reprogramming. Biochim Biophys Acta Gene regulatory mechanisms, 1862: 194407 (doi: 10.1016/j.bbagrm.2019.194407).
www BBA - Gene Regulatory Mechanisms          download PDF         
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Perino M., G.J.C. Veenstra. 2016. Chromatin control of developmental dynamics and plasticity. Developmental Cell 38: 610-620. (doi: 10.1016/j.devcel.2016.08.004).
www Developmental Cell          download PDF         
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Paranjpe S.S., G.J.C. Veenstra. 2015. Establishing pluripotency in early development. Biochim Biophys Acta, 1849, 626-636 (doi:10.1016/j.bbagrm.2015.03.006).
www BBA          download PDF         
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Bogdanovic, O., S.J. van Heeringen, G.J.C. Veenstra. 2012. The epigenome in early vertebrate development. Genesis, 50, 192–206 (doi: 10.1002/dvg.20831).     
www Wiley Online Library       download PDF

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RU
Radboud University Faculty of Science Radboud Institute for Molecular Life Sciences Dept. Molecular Developmental Biology